Program Committee:
ACL (2021-present),
Clinical NLP Workshop (2020-present),
MICCAI (2019-present),
AAAI (2020-present),
Workshop on NLP for Medical Conversations (NLPMC, 2021),
Semantic Indexing and Information Retrieval for Health, 42nd European Conference on Information Retrieval (SIIRH-ECIR, 2020),
BioNLP Workshop (2019-present),
ICCV Visual Recognition for Medical Image Workshop (2019-2020),
ICHI (2019-present),
The IEEE International Conference on Biomedical and Health Informatics (ICBHI, 2016-2021),
ACM-BCB (2015-present)
Reviewer:
ACM Transactions on Computing for Healthcare,
AMIA,
Artificial Intelligence in Medicine,
Bioinformatics,
BMC Bioinformatics,
Computational Biology and Chemistry,
Computer Methods and Programs in Biomedicine,
Database (Oxford),
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
IEEE Journal of Biomedical and Health Informatics (JBHI),
IEEE Transactions on Knowledge and Data Engineering,
IEEE Transactions on Medical Imaging (TMI),
IEEE Transactions on Neural Networks and Learning Systems,
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI),
Journal of Biomedical Informatics (JBI),
Journal of Biomedical Semantics,
Journal of Digital Imaging,
Knowledge-Based Systems,
Nature Communications,
Nature Computational Science,
Nature Medicine
Ophthalmology,
Keloth VK, Banda JM, Gurley M, Heider PM, Kennedy G, Liu H, Liu F, Miller T, Natarajan K, V Patterson O, Peng Y, Raja K, Reeves RM, Rouhizadeh M, Shi J, Wang X, Wang Y, Wei WQ, Williams AE, Zhang R, Belenkaya R, Reich C, Blacketer C, Ryan P, Hripcsak G, Elhadad N, Xu H.
Representing and Utilizing Clinical Textual Data for Real World Studies: An OHDSI Approach. J Biomed Inform. 2023 Mar 17:104343. doi: 10.1016/j.jbi.2023.104343. Epub ahead of print. PMID: 36935011.
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J Am Med Inform Assoc. 2022 Aug 16;29(9):1449-1460. doi: 10.1093/jamia/ocac063. PMID: 35799370; PMCID: PMC9382394.
Islamaj R, Leaman R, Wei CH, Kim S, Kwon D, Comeau D, Peng Y, Cissel D, Coss C, Carol F, Guzman R, Kochar P, Stella K, Trinh D, Sekiya K, Ward J, Whitman D, Schmidt S, Lu Z.
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Tang L, Peng Y, Wang Y, Ding Y, Durrett G, Rousseau JF.
Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses.
Annual Meeting of the Association for Computational Linguistics (ACL). 2023.
Zhu Q, Mathai TS, Mukherjee P, Peng Y, Summers RM, Lu Z.
Utilizing Longitudinal Chest X-Rays and Reports to Pre-Fill Radiology Reports.
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). 2023.
Holste G, Jiang Z, Jaiswal A, Hanna M, Minkowitz S, Legasto A, Escalon J, Steinberger S, Bittman M, Ding Y, Shih G, Peng Y, Wang Z.
How Does Pruning Impact Long-Tailed Multi-Label Medical Image Classifiers? International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). 2023.
Tang L, Kooragayalu S, Wang Y, Ding Y, Durrett G, Rousseau JF, Peng Y.
EchoGen: A new benchmark study on generating conclusions from echocardiogram notes.
In Proceedings of the Workshop on Biomedical Natural Language Processing (BioNLP). 2022 May;2022:359-368. doi: 10.18653/v1/2022.bionlp-1.35. PMID: 36339656; PMCID: PMC9634991.
Zhang M, Peng Y, Fan Y, Li D, Lin X, Wu X.
Research on Chinese orientation analysis.
The First Chinese Opinion Analysis Evaluation (COAE 2008). 2008, 38-45.
Tang L, Sun Z, Idnay B, Nestor JG, Soroush A, Elias PA, Xu Z, Ding Y, Durrett G, Rousseau J, Weng C, Peng Y.
Evaluating Large Language Models on Medical Evidence Summarization. medRxiv [Preprint]. 2023 Apr 24:2023.04.22.23288967. doi: 10.1101/2023.04.22.23288967. PMID: 37162998; PMCID: PMC10168498.
Yan K, Peng Y, Standfort V, Bagheri M, Lu Z, Summers RM.
Comprehensive Lesion Tagging on Diverse CT Images: Learning from Radiology Reports and Label Ontology.
In RSNA Annual Meeting. 2019. (talk)
Yan K, Tang Y, Peng Y, Standfort V, Bagheri M, Lu Z, Summers RM.
MULAN: Multitask Universal Lesion Analysis Network for Joint Lesion Detection, Tagging, and Segmentation in CT Images.
In RSNA Annual Meeting. 2019. (talk)
Phan L, Ward M, Allot A, Peng Y, Wei CH, Lee K, Lu Z, Wang J, Youkharibache P, Zhang D, Lanczycki C, Geer L, Geer R, Marchler-Bauer A, Madej T, Lu S, Marchler G, Wang Y, Bryant S, Rose P, Holmes JB, Kattman BL.
Integrative Analyses of dbSNP For Variant Prioritization and Interpretation.
In Biological Data Science. 2018.
Wei CH, Phan L, Allot A, Peng Y, Lee K, Maiti R, Hefferon T, Feltz J, Lu Z.
Literature Mining to Improve the Prioritization, Curation, and Integration of Knowledge for Clinically Relevant Variants.
In ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB). 2018. (talk)
Dharssi S*, Peng Y*, Chen Q, Agron E, Wong W, Chew E, Lu Z.
A Deep Learning Approach for Automated Detection and Quantification of Geographic Atrophy from Color Fundus Photographs.
In AAO 2018. 2018. (talk)
Wei CH, Phan L, Allot A, Peng Y, Lee K, Maiti R, Hefferon T, Feltz J, Lu Z.
Literature Mining to Improve the Prioritization, Curation, and Integration of Knowledge for Clinically Relevant Variants.
In ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB). 2018. (talk)
Allot A, Peng Y, Wei CH, Lee K, Phan L, Lu Z.
A semantic search engine for linking genomic variant data in PubMed and PMC.
In International Society for Computational Biology. 2018. (poster)
Arighi C, Ding R, Gupta S, Li G, Mahmood AA, Peng Y, Ren J, Ross K, Tudor CO, Huang H, Schimidt C, Wu CH, Vijay-Shanker K.
Text mining tools for biocuration in iProLINK web portal.
In Biocuration. 2015. (poster)
Peng Y, Zhang Z, Wang X, Yang L, Lu L.
Text Mining and Deep Learning for Disease Classification.
Handbook of Medical Image Computing and Computer Assisted Intervention. Zhou et al. (eds.). Elsevier. 2019, 109-136. doi:10.1016/B978-0-12-816176-0.00010-7.
Wang X, Peng Y, Lu L, Bagheri M, Lu Z, Summers R.
Method and system of building hospital-scale chest x-ray database for entity extraction and weakly-supervised classification and localization of common thorax diseases.
WO2018176035A1, filed 03/24/2017